Multiple Sequence Alignment Methods and Protocols
Multiple Sequence Alignment Methods and Protocols
edited by Kazutaka Katoh.
- 1st edition 2021
- 1 recurso en línea (XIII, 321 páginas) 112 ilustraciones, 90 ilustraciones a color
- Methods in Molecular Biology 2231 1940-6029 .
The Clustal Omega Multiple Alignment Package -- Phylogeny-Aware Alignment with PRANK and PAGAN -- Fast and Accurate Multiple Sequence Alignment with MSAProbs-MPI -- Aligning Protein-Coding Nucleotide Sequences with MACSE -- Cooperation of Spalm and Prrn5 for Construction of Gene-Structure-Aware Multiple Sequence Alignment -- Multiple Sequence Alignment Computation using the T-Coffee Regressive Algorithm Implementation -- Multiple Sequence Alignment for Large Heterogeneous Datasets using SATé, PASTA, and UPP -- Sequence Comparison without Alignment: The SpaM Approaches -- Lamassemble: Multiple Alignment and Consensus Sequence of Long Reads -- Automated Removal of Non-Homologous Sequence Stretches with PREQUAL -- Analysis of Protein Intermolecular Interaction with MAFFT-DASH -- Mustguseal and Sister Web-Methods: A Practical Guide to Bioinformatic Analysis of Protein Superfamilies -- Alignment of Biological Sequences with Jalview -- Evolutionary Sequence Analysis and Visualization with Wasabi -- Seaview Version 5: A Multiplatform Software for Multiple Sequence Alignment, Molecular Phylogenetic Analyses, and Tree Reconciliation -- NCBI Genome Workbench: Desktop Software for Comparative Genomics, Visualization, and GenBank Data Submission -- Revisiting Evaluation of Multiple Sequence Alignment Methods.
Chapter "Alignment of Biological Sequences with Jalview" is available open access under a Creative Commons Attribution 4.0 International License via link.springer.com.
9781071610367
10.1007/978-1-0716-1036-7 doi
The Clustal Omega Multiple Alignment Package -- Phylogeny-Aware Alignment with PRANK and PAGAN -- Fast and Accurate Multiple Sequence Alignment with MSAProbs-MPI -- Aligning Protein-Coding Nucleotide Sequences with MACSE -- Cooperation of Spalm and Prrn5 for Construction of Gene-Structure-Aware Multiple Sequence Alignment -- Multiple Sequence Alignment Computation using the T-Coffee Regressive Algorithm Implementation -- Multiple Sequence Alignment for Large Heterogeneous Datasets using SATé, PASTA, and UPP -- Sequence Comparison without Alignment: The SpaM Approaches -- Lamassemble: Multiple Alignment and Consensus Sequence of Long Reads -- Automated Removal of Non-Homologous Sequence Stretches with PREQUAL -- Analysis of Protein Intermolecular Interaction with MAFFT-DASH -- Mustguseal and Sister Web-Methods: A Practical Guide to Bioinformatic Analysis of Protein Superfamilies -- Alignment of Biological Sequences with Jalview -- Evolutionary Sequence Analysis and Visualization with Wasabi -- Seaview Version 5: A Multiplatform Software for Multiple Sequence Alignment, Molecular Phylogenetic Analyses, and Tree Reconciliation -- NCBI Genome Workbench: Desktop Software for Comparative Genomics, Visualization, and GenBank Data Submission -- Revisiting Evaluation of Multiple Sequence Alignment Methods.
Chapter "Alignment of Biological Sequences with Jalview" is available open access under a Creative Commons Attribution 4.0 International License via link.springer.com.
9781071610367
10.1007/978-1-0716-1036-7 doi