Plant Genomics Databases Methods and Protocols
Plant Genomics Databases Methods and Protocols
edited by Aalt D.J van Dijk.
- 1st edition 2017
- 1 recurso en línea (XII, 336 páginas) 141 ilustraciones, 136 ilustraciones a color
- Methods in Molecular Biology 1533 1940-6029 .
Ensembl Plants: Integrating Tools for Visualizing, Mining and Analyzing Plant Genomics Data -- PGSB/MIPS PlantsDB Database Framework for the Integration and Analysis of Plant Genome Data -- Plant Genome DataBase Japan (PGDBj) -- FLAGdb++: A Bioinformatic Environment to Study and Compare Plant Genomes -- Mining Plant Genomic and Genetic Data Using the GnpIS Information System -- The Bio-Analytic Resource for Plant Biology -- The Evolution of Soybean Knowledge Base (SoyKB) -- Using TropGeneDB: a Database Containing Data on Molecular Markers, QTLs, Maps, Genotypes, and Phenotypes for Tropical Crops -- Species-Specific Genome Sequence Databases: A Practical Review -- A Guide to the PLAZA 3.0 Plant Comparative Genomics Database -- Exploring Plant Co-Expression and Gene-Gene Interactions with CORNET 3.0 -- PlaNet: Comparative Co-Expression Network Analyses for Plants -- Practical Utilization of OryzaExpress and Plant Omics Data Center Databases to Explore Gene Expression Networks in Oryza sativa and Other Plant Species -- Pathway Analysis and Omics Data Visualization using Pathway Genome Databases: FragariaCyc, A Case Study -- CSGRqtl: A Comparative Quantitative Trait Locus Database for Saccharinae Grasses -- Plant Genome Duplication Database -- Variant Effect Prediction Analysis using Resources Available at Gramene Database -- Plant Promoter Database -- Construction of the Leaf Senescence Database and Functional Assessment of Senescence-Associated Genes.
This volume introduces databases containing the results from the recent revolution in sequencing technologies. Chapters in Plant Genomics Databases: Methods and Protocols describe database content, as well as typical use-cases. Some chapters explore databases that primarily present genome sequences focusing on one or a few related species, while others include additional datatypes and/or data from various plant species. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, step-by-step, readily reproducible protocols, and tips on troubleshooting and avoiding known pitfalls. Cutting-edge and comprehensive, Plant Genomics Databases: Methods and Protocols is a valuable resource for providing clear guidance in accessing an important collection of plant databases that can be used to add biological value to genomic data.
9781493966585
10.1007/978-1-4939-6658-5 doi
Ensembl Plants: Integrating Tools for Visualizing, Mining and Analyzing Plant Genomics Data -- PGSB/MIPS PlantsDB Database Framework for the Integration and Analysis of Plant Genome Data -- Plant Genome DataBase Japan (PGDBj) -- FLAGdb++: A Bioinformatic Environment to Study and Compare Plant Genomes -- Mining Plant Genomic and Genetic Data Using the GnpIS Information System -- The Bio-Analytic Resource for Plant Biology -- The Evolution of Soybean Knowledge Base (SoyKB) -- Using TropGeneDB: a Database Containing Data on Molecular Markers, QTLs, Maps, Genotypes, and Phenotypes for Tropical Crops -- Species-Specific Genome Sequence Databases: A Practical Review -- A Guide to the PLAZA 3.0 Plant Comparative Genomics Database -- Exploring Plant Co-Expression and Gene-Gene Interactions with CORNET 3.0 -- PlaNet: Comparative Co-Expression Network Analyses for Plants -- Practical Utilization of OryzaExpress and Plant Omics Data Center Databases to Explore Gene Expression Networks in Oryza sativa and Other Plant Species -- Pathway Analysis and Omics Data Visualization using Pathway Genome Databases: FragariaCyc, A Case Study -- CSGRqtl: A Comparative Quantitative Trait Locus Database for Saccharinae Grasses -- Plant Genome Duplication Database -- Variant Effect Prediction Analysis using Resources Available at Gramene Database -- Plant Promoter Database -- Construction of the Leaf Senescence Database and Functional Assessment of Senescence-Associated Genes.
This volume introduces databases containing the results from the recent revolution in sequencing technologies. Chapters in Plant Genomics Databases: Methods and Protocols describe database content, as well as typical use-cases. Some chapters explore databases that primarily present genome sequences focusing on one or a few related species, while others include additional datatypes and/or data from various plant species. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, step-by-step, readily reproducible protocols, and tips on troubleshooting and avoiding known pitfalls. Cutting-edge and comprehensive, Plant Genomics Databases: Methods and Protocols is a valuable resource for providing clear guidance in accessing an important collection of plant databases that can be used to add biological value to genomic data.
9781493966585
10.1007/978-1-4939-6658-5 doi