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020 _a9781627032841
024 7 _a10.1007/978-1-62703-284-1
_2doi
040 _aES-MaUEC
_bspa
_cES-MaUEC
245 1 0 _aGene Regulation
_bMethods and Protocols
_cedited by Minou Bina.
250 _a1st edition 2013
264 1 _aTotowa, NJ
_bHumana Press
_c2013
300 _a1 recurso en línea (XV, 401 páginas)
_b80 ilustraciones, 19 ilustraciones a color
336 _atexto
_btxt
_2rdacontent
337 _aelectrónico
_bc
_2rdamedia
338 _arecurso electrónico
_bcr
_2rdacarrier
347 _aarchivo de texto
_bPDF
490 0 _aMethods in Molecular Biology
_x1940-6029
_v977
505 0 _aGene Regulation -- Isolation of Nuclei for use in Genome-wide DNase Hypersensitivity Assays to Probe Chromatin Structure -- DNase I Digestion of Isolated Nulcei for Genome-Wide Mapping of DNase Hypersensitivity Sites in Chromatin -- Isolation and Analysis of DNA Derived from Nucleosome-Free Regions -- Acquisition of High Quality DNA for Massive Parallel Sequencing by in vivo Chromatin Immunoprecipitation -- Luciferase Assay to Study the Activity of a Cloned Promoter DNA Fragment -- Promoter Deletion Analysis using a Dual-luciferase Reporter System -- Application of mRNA Display for in vitro Selection of DNA-binding Transcription Factor Complexes -- Isolation of Intracellular Protein:DNA Complexes using HaloCHIP; An Antibody Free Alternative to Chromatin Immunoprecipitation -- A Modified Yeast One-Hybrid System for Genome Wide Identification of Transcription Factor Binding Sites -- Identifying Specific Protein--DNA Interactions using SILAC--based Quantitative Proteomics -- Electrophoretic Mobility-Shift and Super-Shift Assays for Studies and Characterization of Protein-DNA Complexes -- Combination of Native and Denaturing PAGE for the Detection of Protein Binding Regions in Long Fragments of Genomic DNA -- Quantitative NanoProteomics Approach for Protein Complex (QNanoPX) using Gold Nanoparticle-based DNA Probe -- Chromatin Assembly and In Vitro Transcription Analyses for Evaluation of Individual Protein Activities in Multicomponent Transcriptional Complexes -- Using FRET to Monitor Protein-induced DNA Bending: The TBP-TATA Complex as a Model System -- Promoter Independent Abortive Transcription Assays Unravel Functional Interactions Between TFIIB and RNA Polymerase -- Fluorescence Cross-correlation Spectroscopy (FCCS) to Observe Dimerization of Transcription Factors in Living Cells -- Nuclear Recruitment Assay as a Tool to validate Transcription Factor Interactions in Mammalian Cells -- Preparation of Cell Lines for Single-Cell Analysis of Transcriptional Activation Dynamics -- Peptide Microarrays for Profiling of Serine/threonine Kinase Activity of Recombinant Kinases and Lysates of Cells and Tissue Samples -- Immunoaffinity Purification of Protein Complexes from Mammalian Cells -- Simple and Efficient Identification of Chromatin Modifying Complexes and Characterization of Complex Composition -- Heavy Methyl-SILAC Labeling Coupled with Liquid Chromatography and High-resolution Mass Spectrometry to Study the Dynamics of Site-specific Histone Methylation -- Analysis of p300 Occupancy at the Early Stage of Stem Cell Differentiation by Chromatin Immunoprecipitation -- Mammalian Two-Hybrid Assays for Studies of Interaction of p300 with Transcription Factors -- Fluorescence Anisotropy Microplate Assay to Investigate the Interaction of Full-length Steroid Receptor Coactivator-1a with Steroid Receptors -- Use of Histone Deacetylase Inhibitors to Examine the Roles of Bromodomain and Histone Acetylation in p300-dependent Gene Expression -- Histone Deacetylases Valproic Acid as a Small Molecule Inducer to Direct the Differentiation of Pluripotent Stem Cells -- Sedimentation and Immunoprecipitation Assays for Analyzing Complexes that Repress Transcription -- Methods for Studies of Protein Interactions with Different DNA Methyltransferases.
520 _aIn this volume of Methods in Molecular Biology™, expert investigators offer comprehensive, complementary, and cutting-edge technologies for studies of gene regulation.  The chapters of Gene Regulation: Methods and Protocols are organized to provide an integrated and a coherent view of control systems and their associated components.  The protocols are broad in their scope.  They include molecular, biochemical, spectroscopic techniques as well as high throughput strategies.  Written in the highly successful Methods in Molecular Biology™ series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and key tips on troubleshooting and avoiding known pitfalls. Comprehensive and broad in their scope, the protocols are useful to researchers in many disciplines including molecular biology, genomics, biochemistry, biomedicine, nutrition, and agricultural sciences.     FEATURES • Techniques for studying chromatin structural features that influence gene activation • In vivo and in vitro assays • Spectroscopic techniques • Technologies for examining genome-wide association of transcription factors with regulatory regions of genes • Proteomics based on SILAC (Stable Isotope Labeling of Amino Acids in Cell Culture) • Peptide microarray technology for studies of kinases • Schemes for isolation and characterization of relatively large multiprotein complexes • Biochemical and biophysical techniques for examining gene repression • In vitro chromatin reconstitution to investigate multicomponent transcriptional complexes • Nuclear recruitment assay to validate transcription factor interactions in mammalian cells.
700 1 _aBina, Minou
_eeditor literario
_4edt
_4http://id.loc.gov/vocabulary/relators/edt
776 0 8 _iPrinted edition:
_z9781627032858
776 0 8 _iPrinted edition:
_z9781627032834
776 0 8 _iPrinted edition:
_z9781493962884
856 4 0 _uhttps://go.openathens.net/redirector/universidadeuropea.es?url=https://doi.org/10.1007/978-1-62703-284-1
_z(usuarios Universidad Europea de Valencia)
942 _2lcc
_cLE
988 _aSpringer_Protocols_2013
999 _c235274
_d235274